"""Tests for the ``sympy.physics.biomechanics.activation.py`` module.""" import pytest from sympy import Symbol from sympy.core.numbers import Float, Integer, Rational from sympy.functions.elementary.hyperbolic import tanh from sympy.matrices import Matrix from sympy.matrices.dense import zeros from sympy.physics.mechanics import dynamicsymbols from sympy.physics.biomechanics import ( ActivationBase, FirstOrderActivationDeGroote2016, ZerothOrderActivation, ) from sympy.physics.biomechanics._mixin import _NamedMixin from sympy.simplify.simplify import simplify class TestZerothOrderActivation: @staticmethod def test_class(): assert issubclass(ZerothOrderActivation, ActivationBase) assert issubclass(ZerothOrderActivation, _NamedMixin) assert ZerothOrderActivation.__name__ == 'ZerothOrderActivation' @pytest.fixture(autouse=True) def _zeroth_order_activation_fixture(self): self.name = 'name' self.e = dynamicsymbols('e_name') self.instance = ZerothOrderActivation(self.name) def test_instance(self): instance = ZerothOrderActivation(self.name) assert isinstance(instance, ZerothOrderActivation) def test_with_defaults(self): instance = ZerothOrderActivation.with_defaults(self.name) assert isinstance(instance, ZerothOrderActivation) assert instance == ZerothOrderActivation(self.name) def test_name(self): assert hasattr(self.instance, 'name') assert self.instance.name == self.name def test_order(self): assert hasattr(self.instance, 'order') assert self.instance.order == 0 def test_excitation_attribute(self): assert hasattr(self.instance, 'e') assert hasattr(self.instance, 'excitation') e_expected = dynamicsymbols('e_name') assert self.instance.e == e_expected assert self.instance.excitation == e_expected assert self.instance.e is self.instance.excitation def test_activation_attribute(self): assert hasattr(self.instance, 'a') assert hasattr(self.instance, 'activation') a_expected = dynamicsymbols('e_name') assert self.instance.a == a_expected assert self.instance.activation == a_expected assert self.instance.a is self.instance.activation is self.instance.e def test_state_vars_attribute(self): assert hasattr(self.instance, 'x') assert hasattr(self.instance, 'state_vars') assert self.instance.x == self.instance.state_vars x_expected = zeros(0, 1) assert self.instance.x == x_expected assert self.instance.state_vars == x_expected assert isinstance(self.instance.x, Matrix) assert isinstance(self.instance.state_vars, Matrix) assert self.instance.x.shape == (0, 1) assert self.instance.state_vars.shape == (0, 1) def test_input_vars_attribute(self): assert hasattr(self.instance, 'r') assert hasattr(self.instance, 'input_vars') assert self.instance.r == self.instance.input_vars r_expected = Matrix([self.e]) assert self.instance.r == r_expected assert self.instance.input_vars == r_expected assert isinstance(self.instance.r, Matrix) assert isinstance(self.instance.input_vars, Matrix) assert self.instance.r.shape == (1, 1) assert self.instance.input_vars.shape == (1, 1) def test_constants_attribute(self): assert hasattr(self.instance, 'p') assert hasattr(self.instance, 'constants') assert self.instance.p == self.instance.constants p_expected = zeros(0, 1) assert self.instance.p == p_expected assert self.instance.constants == p_expected assert isinstance(self.instance.p, Matrix) assert isinstance(self.instance.constants, Matrix) assert self.instance.p.shape == (0, 1) assert self.instance.constants.shape == (0, 1) def test_M_attribute(self): assert hasattr(self.instance, 'M') M_expected = Matrix([]) assert self.instance.M == M_expected assert isinstance(self.instance.M, Matrix) assert self.instance.M.shape == (0, 0) def test_F(self): assert hasattr(self.instance, 'F') F_expected = zeros(0, 1) assert self.instance.F == F_expected assert isinstance(self.instance.F, Matrix) assert self.instance.F.shape == (0, 1) def test_rhs(self): assert hasattr(self.instance, 'rhs') rhs_expected = zeros(0, 1) rhs = self.instance.rhs() assert rhs == rhs_expected assert isinstance(rhs, Matrix) assert rhs.shape == (0, 1) def test_repr(self): expected = 'ZerothOrderActivation(\'name\')' assert repr(self.instance) == expected class TestFirstOrderActivationDeGroote2016: @staticmethod def test_class(): assert issubclass(FirstOrderActivationDeGroote2016, ActivationBase) assert issubclass(FirstOrderActivationDeGroote2016, _NamedMixin) assert FirstOrderActivationDeGroote2016.__name__ == 'FirstOrderActivationDeGroote2016' @pytest.fixture(autouse=True) def _first_order_activation_de_groote_2016_fixture(self): self.name = 'name' self.e = dynamicsymbols('e_name') self.a = dynamicsymbols('a_name') self.tau_a = Symbol('tau_a') self.tau_d = Symbol('tau_d') self.b = Symbol('b') self.instance = FirstOrderActivationDeGroote2016( self.name, self.tau_a, self.tau_d, self.b, ) def test_instance(self): instance = FirstOrderActivationDeGroote2016(self.name) assert isinstance(instance, FirstOrderActivationDeGroote2016) def test_with_defaults(self): instance = FirstOrderActivationDeGroote2016.with_defaults(self.name) assert isinstance(instance, FirstOrderActivationDeGroote2016) assert instance.tau_a == Float('0.015') assert instance.activation_time_constant == Float('0.015') assert instance.tau_d == Float('0.060') assert instance.deactivation_time_constant == Float('0.060') assert instance.b == Float('10.0') assert instance.smoothing_rate == Float('10.0') def test_name(self): assert hasattr(self.instance, 'name') assert self.instance.name == self.name def test_order(self): assert hasattr(self.instance, 'order') assert self.instance.order == 1 def test_excitation(self): assert hasattr(self.instance, 'e') assert hasattr(self.instance, 'excitation') e_expected = dynamicsymbols('e_name') assert self.instance.e == e_expected assert self.instance.excitation == e_expected assert self.instance.e is self.instance.excitation def test_excitation_is_immutable(self): with pytest.raises(AttributeError): self.instance.e = None with pytest.raises(AttributeError): self.instance.excitation = None def test_activation(self): assert hasattr(self.instance, 'a') assert hasattr(self.instance, 'activation') a_expected = dynamicsymbols('a_name') assert self.instance.a == a_expected assert self.instance.activation == a_expected def test_activation_is_immutable(self): with pytest.raises(AttributeError): self.instance.a = None with pytest.raises(AttributeError): self.instance.activation = None @pytest.mark.parametrize( 'tau_a, expected', [ (None, Symbol('tau_a_name')), (Symbol('tau_a'), Symbol('tau_a')), (Float('0.015'), Float('0.015')), ] ) def test_activation_time_constant(self, tau_a, expected): instance = FirstOrderActivationDeGroote2016( 'name', activation_time_constant=tau_a, ) assert instance.tau_a == expected assert instance.activation_time_constant == expected assert instance.tau_a is instance.activation_time_constant def test_activation_time_constant_is_immutable(self): with pytest.raises(AttributeError): self.instance.tau_a = None with pytest.raises(AttributeError): self.instance.activation_time_constant = None @pytest.mark.parametrize( 'tau_d, expected', [ (None, Symbol('tau_d_name')), (Symbol('tau_d'), Symbol('tau_d')), (Float('0.060'), Float('0.060')), ] ) def test_deactivation_time_constant(self, tau_d, expected): instance = FirstOrderActivationDeGroote2016( 'name', deactivation_time_constant=tau_d, ) assert instance.tau_d == expected assert instance.deactivation_time_constant == expected assert instance.tau_d is instance.deactivation_time_constant def test_deactivation_time_constant_is_immutable(self): with pytest.raises(AttributeError): self.instance.tau_d = None with pytest.raises(AttributeError): self.instance.deactivation_time_constant = None @pytest.mark.parametrize( 'b, expected', [ (None, Symbol('b_name')), (Symbol('b'), Symbol('b')), (Integer('10'), Integer('10')), ] ) def test_smoothing_rate(self, b, expected): instance = FirstOrderActivationDeGroote2016( 'name', smoothing_rate=b, ) assert instance.b == expected assert instance.smoothing_rate == expected assert instance.b is instance.smoothing_rate def test_smoothing_rate_is_immutable(self): with pytest.raises(AttributeError): self.instance.b = None with pytest.raises(AttributeError): self.instance.smoothing_rate = None def test_state_vars(self): assert hasattr(self.instance, 'x') assert hasattr(self.instance, 'state_vars') assert self.instance.x == self.instance.state_vars x_expected = Matrix([self.a]) assert self.instance.x == x_expected assert self.instance.state_vars == x_expected assert isinstance(self.instance.x, Matrix) assert isinstance(self.instance.state_vars, Matrix) assert self.instance.x.shape == (1, 1) assert self.instance.state_vars.shape == (1, 1) def test_input_vars(self): assert hasattr(self.instance, 'r') assert hasattr(self.instance, 'input_vars') assert self.instance.r == self.instance.input_vars r_expected = Matrix([self.e]) assert self.instance.r == r_expected assert self.instance.input_vars == r_expected assert isinstance(self.instance.r, Matrix) assert isinstance(self.instance.input_vars, Matrix) assert self.instance.r.shape == (1, 1) assert self.instance.input_vars.shape == (1, 1) def test_constants(self): assert hasattr(self.instance, 'p') assert hasattr(self.instance, 'constants') assert self.instance.p == self.instance.constants p_expected = Matrix([self.tau_a, self.tau_d, self.b]) assert self.instance.p == p_expected assert self.instance.constants == p_expected assert isinstance(self.instance.p, Matrix) assert isinstance(self.instance.constants, Matrix) assert self.instance.p.shape == (3, 1) assert self.instance.constants.shape == (3, 1) def test_M(self): assert hasattr(self.instance, 'M') M_expected = Matrix([1]) assert self.instance.M == M_expected assert isinstance(self.instance.M, Matrix) assert self.instance.M.shape == (1, 1) def test_F(self): assert hasattr(self.instance, 'F') da_expr = ( ((1/(self.tau_a*(Rational(1, 2) + Rational(3, 2)*self.a))) *(Rational(1, 2) + Rational(1, 2)*tanh(self.b*(self.e - self.a))) + ((Rational(1, 2) + Rational(3, 2)*self.a)/self.tau_d) *(Rational(1, 2) - Rational(1, 2)*tanh(self.b*(self.e - self.a)))) *(self.e - self.a) ) F_expected = Matrix([da_expr]) assert self.instance.F == F_expected assert isinstance(self.instance.F, Matrix) assert self.instance.F.shape == (1, 1) def test_rhs(self): assert hasattr(self.instance, 'rhs') da_expr = ( ((1/(self.tau_a*(Rational(1, 2) + Rational(3, 2)*self.a))) *(Rational(1, 2) + Rational(1, 2)*tanh(self.b*(self.e - self.a))) + ((Rational(1, 2) + Rational(3, 2)*self.a)/self.tau_d) *(Rational(1, 2) - Rational(1, 2)*tanh(self.b*(self.e - self.a)))) *(self.e - self.a) ) rhs_expected = Matrix([da_expr]) rhs = self.instance.rhs() assert rhs == rhs_expected assert isinstance(rhs, Matrix) assert rhs.shape == (1, 1) assert simplify(self.instance.M.solve(self.instance.F) - rhs) == zeros(1) def test_repr(self): expected = ( 'FirstOrderActivationDeGroote2016(\'name\', ' 'activation_time_constant=tau_a, ' 'deactivation_time_constant=tau_d, ' 'smoothing_rate=b)' ) assert repr(self.instance) == expected